Globus is a service that makes it easy to move, sync, and share large amounts of data. Globus will manage file transfers, monitor performance, retry failures, recover from faults automatically when possible, and report the status of your data transfer. Globus uses GridFTP for more reliableand high-performance file transfer, and will queue file transfers to be performed asynchronously in the background.
Download and install the latest release of Collaborator's Peer Code Review software. Find both client and server installers here. Download Mac OS X Installers v.13.1.13100. Mac OS X Client Installer Requires: Oracle Java 8 or higher or OpenJDK 11 or higher.
Hi, I have just downloaded the latest version of Code Collaborator Client Installer on my Mac with OS X 10.9.2. When I tried to click the installer.app to install the client software, it popped up a message saying that to oepn installer.app, it would need Java SE 6 runtime. However, the website. The Action Building game where you team up with other players to build massive forts and battle against hordes of monsters, all while crafting and looting in giant worlds where no two games are ever the same. .Collaborator Eclipse plugin users need to update their plugin with a 13.x version that is less than or equal to the 13.x version of the Collaborator Server.Previous versions of Collaborator were allowing users, in some scenarios, to access and use Collaborator without consuming a floating license. Collaborator 12.0 addressed this. Postman Canary Be the first to experience new Postman features. If you want to be first in line to experience new features, download our latest Canary builds available for OSX (x64) / Windows (x86 or x64) / Linux (x86 or x64) for a sneak peek.
NIH HPC (Helix/Biowulf) Endpoints
The NIH HPC (Biowulf) endpoint is called 'NIH HPC Data Transfer'.
The Globus endpoint for transferring data to or from your Helix/Biowulf /home, /data or /scratch areas is NIH HPC Data Transfer
![]()
You do not need to be logged on to Helix or Biowulf to start or monitor a transfer.
NIH researchers can use their NIH Login username and password to access Globus. Go to https://www.globus.org/ and click on Log In in the upper right corner of the page.
Type or scroll down to National Institues of Health in the Organization box, and then click Continue.
You will be taken to a familiar-looking page for NIH login.
Enter your NIH login username and password.
The Globus Connect client is available for Windows, Mac or Linux desktop systems. There are detailed instructions on the Globus website. See links below.
How to install and configure Globus Connect Personal on
Windows Note: By default, you will need adminstrative access to install Globus Connect Personal on Windows. Facebook pages download for mac. This is because it will attempt to install into C:Program Files (x86)Globus Connect Personal. To install as a regular, non-administrative account, change the installation directory to which you have write access, for example Desktop --> Globus Connect Personal.
Note:During installation, you will be offered the option of a 'High Assurance' endpoint. Do not selectthis option. NIH does not have a High Assurance Globus subscription.
Transferring data between your desktop and Biowulf
On your desktop system, you will need to have Globus Connect Personal running. Point your web browser to www.globus.org.Click on 'Log on', and enter your NIH username and password on the following NIH login page. After authenticating, you will be taken to the Globus FileManager page.
In the 'Collection' box, type 'NIH HPC Data Transfer'. You may need to authenticate: if so, you will be taken to the Globus authentication page as described above, and can authenticate with your NIH login username and password.
By default, you should see the files in your /home area on Helix/Biowulf appear. You can also point to your /data area or another shared area by entering, for example, '/data/myusername' in the Path box.
Click on 'Sync or Transfer files'.
Enter the other endpoint, in this case the endpoint name that you gave to your desktop system when you installed Globus. You should now seeboth endpoints listed in two panes of the Globus window.
To transfer files, select a file or directory on one endpoint, and click the blue 'Start' button.
The page will now say that the transfer request submitted successfully.Click on 'View details' to display task detail information. Statistics are displayed at this page. You will also receive an email when the transfer is complete.
Transferring data between two Globus Personal endpoints
If you need to transfer data between two Globus Connect Personal endpoints (e.g. your desktop system and your laptop), you will need a Globus Plus license. Email [email protected] to request one.Your Globus Plus license will be terminated when you leave NIH.
Once you have the license, you can transfer data between your own two Globus Personal endpoints, just as between any other Globus endpoints. Note that this only applies to a single Globus user, with a Globus Plus license, running Globus Connect Personal on two different systems.
Note: in the example below, the command-line globus transfer is started on Helix, the interactive data transfer node. However, the transfer to the NIH HPC endpoint ('NIH HPC Data Transfer') will go via the 8 HPC data transfer nodes.
Sample session:When you point a web browser to the URL that is provided, you will need to authenticate against the NIH domain, with your usual NIH login username and password.You will then see a page like the following
When you click Allow, you will get a page with a long authorization code. Cut-and-paste that code back into your terminal window:
Depending on how recently you signed up for Globus, the command 'globus whoami' may show you your Globus userid ([email protected]) or your NIH userid ([email protected]).Once you have logged in to Globus, you can set up transfers. You will need the ID of the endpoint, which you can find using the 'globus endpoint search' command. In the example below, the user obtains a list of NIH endpoints, and then gets a listing of the user's files on one of those endpoints.You may need to 'activate' the Globus endpoints you plan to use. Once an endpoint is activated, it will stay active for 10 days. If your transfer is not completed within10 days, you'll get an email message requesting you to re-activate the endpoint, and once you've done that the transfer will resume. You can check the status of endpoints at https://www.globus.org/app/endpoints. Once your endpoints are activated, you can set up transfers. You can use the method above in your Biowulf batch scripts, for example, to transfer data at the end of a job. [Example]
Globus Plus
For some kinds of data transfer or sharing, you need Globus Plus. The NIH Globus subscription includes Globus Plus for all users, but you need to email [email protected] to request a Globus Plus invite.
When do you not need Globus Plus?
Note 2: By default, files on a Globus Connect Personal endpoint (e.g. your laptop or desktop) may not be shareable. You will need to configure that via the instructions at these links: Linux, Mac, Windows.
If your data is on the NIH HPC systems, you can easily share it with collaborators who are at NIH or elsewhere. All they will need is a (free) Globus account.The advantage of data sharing via Globus is that you do not need to transfer your data anywhere. This prevents data duplication, wastage of storage space, and saves time. You have full control over which files your collaborator can access, and whether they have read-only or read-write permissions.
Sharing data from NIH HPC systems (e.g. Helix or Biowulf):
Sharing data from a Globus Connect Personal endpoint (e.g. your desktop system)
Important Notes about Sharing:
Below are details on how to share an endpoint, or a subset of an endpoint, with another Globus user.
Navigate to the Globus File Manager' on globus.org and select the subdirectory you want to share.
Click on the 'Share' button in the right side pane.
Give a description for your new shared endpoint, then click 'Create' . Now you will want to share it with other Globus users. Click on 'AddPermissions - Share With'
This shows some information about the shared endpoint. You can choose to share with other Globus users by selecting their email address, Globus username, name, or share with a group or all users. You can search with a name, or an email address. By default, you will provide only readaccess to the directory. If you wish your colleague to transfer data into the directory, you can also provide write access by checking the 'write' button.You can also select 'Send Email' to send email to your colleague. Once the options have been selected, click 'Add Permission'.
You should then see the share and the people you have shared it with.
You can repeat this process for any number of collaborators. At any time, you can terminate access to the directory by clicking the 'X' next to the invitee in the screen above.
To see all endpoints you have shared, go to 'Endpoints' in the left bar, then 'Administered by You'.
It is highly recommended that you delete the endpoint share when your collaborator has completed downloading the data. You can do so by going to 'Endpoints' in the left bar, then 'Administered by You', select the endpoint, and click on 'Delete endpoint'.
If you set up a shared endpoint and want your collaborator to download the data, this is what you need to tell them.
First, the collaborator needs to get a Globus account. The instructions for setting up a Globus account are as described on our webpage above. This account is free. They may alreadyhave Globus access via their institution.
If the collaborator is downloading the data to his/her personal workstation, they need to installthe Globus Connect client. Globus connect clients are available for Mac, Windows or Linux systems and are free.
If you clicked on the 'notify users via email' button when you added access for this user, they should have received a message that looks like this:
You can, of course, also send email to your collaborators yourself, telling them you've shared a folder with them. The collaborator should click on the link, which will require logging in with their institutional or Globus login username and password. They should then be able to see the files youshared with them.
They should click on the files they want to transfer, then 'Transfer or Sync to', enter their own endpoint name and desired path.
and click the 'Start' button near the bottom to start the transfer.
If the collaborator wants to write to a network share, he/she must map this location to a local drive. See the Configuration section ofthe Globus Connect Personal installation documentation.
Encryption and Security
Data can be encrypted during Globus file transfers. In some cases encryption cannot be supported by an endpoint, and Globus Online will signal an error.
For more information, see How does Globus Online ensure my data is secure?
In the Transfer Files window, click on 'More options' at the bottom of the 2 panes.Check the 'encrypt transfer' checkbox in the options.
Alternatively, you can encrypt the files before transfer using any method on your local system, then transfer them using Globus, then unencrypt on the other end.
Note that encryption and verification will slow down the data transfer.
Troubleshooting
See also
Globus Online Security Review by Von Welch, Feb 2012.
NOTE: Between mid October 2019 and mid February 2020 everyone in the Army was migrated to use their PIV Authentication certificate for Email access. You no longer use the Email certificate for Enterprise Email. Mac users who choose to upgrade (or already have upgraded) to Mac OS Catalina (10.15.x) will need to uninstall all 3rd Party CAC enablers per https://militarycac.com/macuninstall.htm AND reenable the built in smart card ability (very bottom of macuninstall link above) If you purchased your Mac with OS Catalina (10.15.x) already installed, you can skip the uninstall part above and follow the instructions below. 6 'high level' steps needed, follow down the page to make this a painless systematic process
Step 1: Is your CAC reader Mac friendly?
Visit the USB Readers page to verify the CAC reader you have is Mac friendly.
Visit the USB-C Readers page to verify the CAC reader you have is Mac friendly.
'Some, not all' CAC readers may need to have a driver installed to make it work.
Code Collaborator Client Download Mac Download
NOTE: Readers such as: SCR-331 & SCR-3500A may need a firmware update (NO OTHER Readers need firmware updates).
Information about these specific readers are in Step 2
Step 2: Can your Mac 'see' the reader?
Plug the CAC reader into an open USB port before proceeding, give it a few moments to install
Step 2a: Click the Apple Icon in the upper left corner of the desktop, select 'About This Mac'
Step 2b: Click 'System Report..' (button)
Step 2c: Verify the CAC reader shows in Hardware, USB, under USB Device Tree. Different readers will show differently, most readers have no problem in this step. See Step 2c1 for specific reader issues.
Step 2c1: Verify firmware version on your SCR-331 or GSR-202, 202V, 203 CAC, or SCR-3500a reader. If you have a reader other than these 5, Proceed directly to step 3
Step 2c1a-SCR-331 reader
If your reader does not look like this, go to the next step.
In the 'Hardware' drop down, click 'USB.' On the right side of the screen under 'USB Device Tree' the window will display all hardware plugged into the USB ports on your Mac. Look for âSCRx31 USB Smart Card Reader.â If the Smart Card reader is present, look at 'Version' in the lower right corner of this box: If you have a number below 5.18, you need to update your firmware to 5.25. If you are already at 5.18 or 5.25, your reader is installed on your system, and no further hardware changes are required. You can now Quit System Profiler and continue to Step 3.
Step 2c1b-SCR-3500A reader
If you have the SCR3500A P/N:905430-1 CAC reader,you may need to install this driver, as the one that installs automatically will not work on most Macs. Hold the control key [on your keyboard] when clicking the .pkg file [with your mouse], select [the word] Open
Step 3: Verify which version of MacOS do you have?
(You need to know this information for step 6)
Step 3a: Click the Apple Icon in the upper left corner of your desktop and select 'About This Mac'
Step 3b: Look below Mac OS X for: Example: Version 10.X.X.
Step 4: Figure out which CAC (ID Card) you have
(You need to know this information for step 6)
Look at the top back of your ID card for these card types. If you have any version other than the six shown below, you need to visit an ID card office and have it replaced. All CACs [other than these six] were supposed to be replaced prior to 1 October 2012.
Find out how to flip card over video
Step 5: Install the DoD certificates (for Safari and Chrome Users)
Go to Keychain Access
Click: Go (top of screen), Utilities, double click Keychain Access.app
(You can also type: keychain access using Spotlight (this is my preferred method))
Select login (under Keychains),and All Items (under Category).
Download the 5 files via links below (you may need to <ctrl> click, select Download Linked File As.. on each link) Save to your downloads folder
Collaborator Code Review Tool
Please know.. IF You have any DoD certificates already located in your keychain access, you will need to delete them prior to running the AllCerts.p7b file below.
https://militarycac.com/maccerts/AllCerts.p7b,
https://militarycac.com/maccerts/RootCert2.cer,
https://militarycac.com/maccerts/RootCert3.cer,
https://militarycac.com/maccerts/RootCert4.cer, and
Double click each of the files to install certificates into the login section of keychain
Select the Kind column, verify the arrow is pointing up, scroll down to certificate, look for all of the following certificates:
DOD EMAIL CA-33 through DOD EMAIL CA-34,
DOD EMAIL CA-39 through DOD EMAIL CA-44,
DOD EMAIL CA-49 through DOD EMAIL CA-52,
DOD EMAIL CA-59,
DOD ID CA-33 through DOD ID CA-34,
DOD ID CA-39 through DOD ID CA-44,
DOD ID CA-49 through DOD ID CA-52,
DOD ID CA-59
DOD ID SW CA-35 through DOD ID SW CA-38,
DOD ID SW CA-45 through DOD ID SW CA-48,
DoD Root CA 2 through DoD Root CA 5,
DOD SW CA-53 through DOD SW CA-58, and
DOD SW CA-60 through DOD SW CA-61
NOTE: If you are missing any of the above certificates, you have 2 choices,
1. Delete all of them, and re-run the 5 files above, or
2. Download the allcerts.zip file and install each of the certificates you are missing individually.
Errors:
Error 100001 Solution
Error 100013 Solution
You may notice some of the certificates will have a red circle with a white X . This means your computer does not trust those certificates
You need to manually trust the DoD Root CA 2, 3, 4, & 5 certificates
Double click each of the DoD Root CA certificates, select the triangle next to Trust, in the When using this certificate: select Always Trust, repeat until all 4 do not have the red circle with a white X.
You may be prompted to enter computer password when you close the window
Once you select Always Trust, your icon will have a light blue circle with a white + on it.
The 'bad certs' that have caused problems for Windows users may show up in the keychain access section on some Macs. These need to be deleted / moved to trash.
The DoD Root CA 2 & 3 you are removing has a light blue frame, leave the yellow frame version. The icons may or may not have a red circle with the white x
If you have tried accessing CAC enabled sites prior to following these instructions, please go through this page before proceeding
Clearing the keychain (opens a new page)
Please come back to this page to continue installation instructions.
Step 5a: DoD certificate installation instructions for Firefox users
NOTE: Firefox will not work on Catalina (10.15.x), or last 4 versions of Mac OS if using the native Apple smartcard ability
Download AllCerts.zip, [remember where you save it].
double click the allcerts.zip file (it'll automatically extract into a new folder)
Option 1 to install the certificates (semi automated):
From inside the AllCerts extracted folder, select all of the certificates
<control> click (or Right click) the selected certificates, select Open With, Other..
In the Enable (selection box), change to All Applications
Select Firefox, then Open
You will see several dozen browser tabs open up, let it open as many as it wants.
You will eventually start seeing either of the 2 messages shown next
If the certificate is not already in Firefox, a window will pop up stating 'You have been asked to trust a new Certificate Authority (CA).'
Check all three boxes to allow the certificate to: identify websites, identify email users, and identify software developers
Collaborator Download
'Alert This certificate is already installed as a certificate authority.' Click OK
Once you've added all of the certificates..
⢠Click Firefox (word) (upper left of your screen) ⢠Preferences ⢠Advanced (tab) ⢠Press Network under the Advanced Tab ⢠In the Cached Web Content section, click Clear Now (button). ⢠Quit Firefox and restart it
Option 2 to install the certificates (very tedious manual):
Click Firefox (word) (upper left of your screen)
Preferences
Advanced (tab on left side of screen)
Certificates (tab)
View Certificates (button)
Authorities (tab)
Import (button)
Browse to the DoD certificates (AllCerts) extracted folder you downloaded and extracted above.
Note: You have to do this step for every single certificate
Note2: If the certificate is already in Firefox, a window will pop up stating: 'Alert This certificate is already installed as a certificate authority (CA).' Click OK
Note3: If the certificate is not already in Firefox, a window will pop up stating 'You have been asked to trust a new Certificate Authority (CA).'
Check all three boxes to allow the certificate to: identify websites, identify email users, and identify software developers
Once you've added all of the certificates..
⢠Click Firefox (word) (upper left of your screen) ⢠Preferences ⢠Advanced (tab) ⢠Press Network under the Advanced Tab ⢠In the Cached Web Content section, click Clear Now (button). ⢠Quit Firefox and restart it
Step 6: Decide which CAC enabler you can / want to use
Only for Mac El Capitan (10.11.x or older)
After installing the CAC enabler, restart the computer and go to a CAC enabled website
Smartbear Collaborator Client Download
NOTE: Mac OS Sierra (10.12.x), High Sierra (10.13.x), Mojave (10.14.x) or Catalina (10.15.x) computers no longer need a CAC Enabler.
Collaborator Client Gui
Try to access the CAC enabled site you need to access now
Mac support provided by: Michael Danberry
Comments are closed.
|
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |